Cancer Metabolism and Immunology Selected Program-Related Publications

Key to Member Program Affiliation

CMI
GICG
CP
CIPT
CPC

Cancer Metabolism and Immunology
Genomic Instability and Cancer Genetics
Cancer Pharmacology
Clinical Investigations and Precision Therapeutics
Cancer Prevention and Control

Publication

Member(s) Credited

Bartman CR, Faubert B, Rabinowitz JD (CMI), DeBerardinis RJ. Metabolic pathway analysis using stable isotopes in patients with cancer. Nat Rev Cancer. 2023 Dec 01; 23(12):863-878. DOI: 10.1038/s41568-023-00632-z. 2023 Oct 31.

Rabinowitz JD (CMI)

Nakandakari-Higa S, Walker S, Canesso MCC, van der Heide V, Chudnovskiy A, Kim DY, Jacobsen JT, Parsa R, Bilanovic J, Parigi SM, Fiedorczuk K, Fuchs E, Bilate AM, Pasqual G, Mucida D, Kamphorst AO, Pritykin Y (CMI), Victora GD. Universal recording of immune cell interactions in vivo. Nature. 2024 Mar 01; 627(8003):399-406. DOI: 10.1038/s41586-024-07134-4. 2024 Mar 6.

Pritykin Y (CMI)

Swanton C, Bernard E, Abbosh C, André F, Auwerx J, Balmain A, Bar-Sagi D, Bernards R, Bullman S, DeGregori J, Elliott C, Erez A, Evan G, Febbraio MA, Hidalgo A, Jamal-Hanjani M, Joyce JA, Kaiser M, Lamia K, Locasale JW, Loi S, Malanchi I, Merad M, Musgrave K, Patel KJ, White E (CMI), et al. Embracing cancer complexity: Hallmarks of systemic disease. Cell. 2024 Mar 28; 187(7):1589-1616. DOI: 10.1016/j.cell.2024.02.009.

White E (CMI)

Nelson CM (CMI), Xiao B, Wickström SA, Dufrêne YF, Cosgrove DJ, Heisenberg CP, Dupont S, Shyer AE, Rodrigues AR, Trepat X, Diz-Muñoz A. Mechanobiology: Shaping the future of cellular form and function. Cell. 2024 May 23; 187(11):2652-2656. DOI: 10.1016/j.cell.2024.04.006.

Nelson CM (CMI)

Banavar SP, Nelson CM (CMI). Mechanical properties pattern the skin. Science. 2023 Nov 24; 382(6673):880. DOI: 10.1126/science.adl2004. 2023 Nov 23.

Nelson CM (CMI)

Routy B, Jackson T, Mählmann L, Baumgartner CK, Blaser M (CMI), Byrd A, Corvaia N, Couts K, Davar D, Derosa L, Hang HC, Hospers G, Isaksen M, Kroemer G, Malard F, McCoy KD, Meisel M, Pal S, Ronai Z, Segal E, Sepich-Poore GD, Shaikh F, Sweis RF, Trinchieri G, van den Brink M, Zhao L (CMI), et al. Melanoma and microbiota: Current understanding and future directions. Cancer Cell. 2024 Jan 08; 42(1):16-34. DOI: 10.1016/j.ccell.2023.12.003. 2023 Dec 28.

Blaser M (CMI), Zhao L (CMI)

Guruprasad P, Carturan A, Zhang Y, Cho JH, Kumashie KG, Patel RP, Kim KH, Lee JS, Lee Y, Kim JH, Chung J, Joshi A, Cohen I, Shestov M, Ghilardi G, Harris J, Pajarillo R, Angelos M, Lee YG, Liu S, Rodriguez J, Wang M, Ballard HJ, Gupta A, Ugwuanyi OH, Liu D (CMI), et al. The BTLA-HVEM axis restricts CAR T cell efficacy in cancer. Nat Immunol. 2024 Jun 01; 25(6):1020-1032. DOI: 10.1038/s41590-024-01847-4. 2024 Jun 3.

Liu D (CMI)

McBride MJ (CP), Hunter CJ, Zhang Z, TeSlaa T, Xu X, Ducker GS, Rabinowitz JD (CMI). Glycine homeostasis requires reverse SHMT flux. Cell Metab. 2024 Jan 02; 36(1):103-115.e4. DOI: 10.1016/j.cmet.2023.12.001.

McBride MJ (CP), Rabinowitz JD (CMI)

Marshall G, Cao J (CMI). Mechanism-directed combinational immunotherapies in liver cancer hold promise. Cell Mol Immunol. 2023 Nov 01; 20(11):1395-1397. DOI: 10.1038/s41423-023-01068-z. 2023 Aug 7.

Cao J (CMI)

Chen L, Qiu X, Dupre A, Pellon-Cardenas O, Fan X, Xu X, Rout P, Walton KD, Burclaff J, Zhang R, Fang W, Ofer R, Logerfo A, Vemuri K, Bandyopadhyay S, Wang J, Barbet G (CIPT, CMI), Wang Y, Gao N (CMI), Perekatt AO (GICG), Hu W (GICG), Magness ST, Spence JR, Verzi MP (GICG). TGFB1 induces fetal reprogramming and enhances intestinal regeneration. Cell Stem Cell. 2023 Nov 02; 30(11):1520-1537.e8. DOI: 10.1016/j.stem.2023.09.015. 2023 Oct 20.

Barbet G (CIPT, CMI),
Gao N (CMI),
Perekatt AO (GICG),
Hu W (GICG),
Verzi MP (GICG)

Wang J, Chang CY, Yang X, Zhou F, Liu J, Bargonetti J, Zhang L (CIPT), Xie P (CMI), Feng Z (GICG), Hu W (GICG). p53 suppresses MHC class II presentation by intestinal epithelium to protect against radiation-induced gastrointestinal syndrome. Nat Commun. 2024 Jan 02; 15(1):137. DOI: 10.1038/s41467-023-44390-w. 2024 Jan 2.

Zhang L (CIPT),
Xie P (CMI),
Feng Z (GICG),
Hu W (GICG)

Yang X, Wang J, Chang CY, Zhou F, Liu J, Xu H, Ibrahim M, Gomez M, Guo GL (CMI), Liu H (CIPT), Zong WX (CMI), Wondisford FE (CMI), Su X (CMI), White E (CMI), Feng Z (GICG), Hu W (GICG). Leukemia inhibitory factor suppresses hepatic de novo lipogenesis and induces cachexia in mice. Nat Commun. 2024 Jan 20; 15(1):627. DOI: 10.1038/s41467-024-44924-w. 2024 Jan 20.

Guo GL (CMI),
Liu H (CIPT),
Zong WX (CMI),
Wondisford FE (CMI),
Su X (CMI),
White E (CMI),
Feng Z (GICG),
Hu W (GICG)

Lan T, Arastu S, Lam J, Kim H, Wang W, Wang S, Bhatt V, Lopes EC, Hu Z, Sun M, Luo X, Ghergurovich JM, Su X (CMI), Rabinowitz JD (CMI), White E (CMI), Guo JY (CMI). Glucose-6-phosphate dehydrogenase maintains redox homeostasis and biosynthesis in LKB1-deficient KRAS-driven lung cancer. Nat Commun. 2024 Jul 12; 15(1):5857. DOI: 10.1038/s41467-024-50157-8. 2024 Jul 12.

Su X (CMI),
Rabinowitz JD (CMI),
White E (CMI),
Guo JY (CMI)

Gupta M, Johnson ANT, Cruz ER, Costa EJ, Guest RL, Li SH, Hart EM, Nguyen T, Stadlmeier M, Bratton BP, Silhavy TJ, Wingreen NS, Gitai Z (CMI), Wühr M (CP). Global protein turnover quantification in Escherichia coli reveals cytoplasmic recycling under nitrogen limitation. Nat Commun. 2024 Jul 13; 15(1):5890. DOI: 10.1038/s41467-024-49920-8. 2024 Jul 13.

Gitai Z (CMI),
Wühr M (CP)

Brumbaugh-Reed EH, Gao Y, Aoki K, Toettcher JE (CMI). Rapid and reversible dissolution of biomolecular condensates using light-controlled recruitment of a solubility tag. Nat Commun. 2024 Aug 07; 15(1):6717. DOI: 10.1038/s41467-024-50858-0. 2024 Aug 7.

Toettcher JE (CMI)

Shen Y, Dinh HV, Cruz ER, Chen Z, Bartman CR, Xiao T, Call CM, Ryseck RP, Pratas J, Weilandt D, Baron H, Subramanian A, Fatma Z, Wu ZY, Dwaraknath S, Hendry JI, Tran VG, Yang L, Yoshikuni Y, Zhao H, Maranas CD, Wühr M (CP), Rabinowitz JD (CMI). Mitochondrial ATP generation is more proteome efficient than glycolysis. Nat Chem Biol. 2024 Sep 01; 20(9):1123-1132. DOI: 10.1038/s41589-024-01571-y. 2024 Mar 6.

Wühr M (CP), Rabinowitz JD (CMI)

Paramore SV, Trenado-Yuste C, Sharan R, Nelson CM (CMI), Devenport D (CMI). Vangl-dependent mesenchymal thinning shapes the distal lung during murine sacculation. Dev Cell. 2024 May 20; 59(10):1302-1316.e5. DOI: 10.1016/j.devcel.2024.03.010. 2024 Apr 2.

Nelson CM (CMI), Devenport D (CMI)

Nguyen R, Doubrovina E, Mousset CM, Jin BY, Okada R, Zhang X, Clavel A, Reyes-Gonzalez JM, Dyomin V, Diaz L, Zhang L, Abbas S, Sun M, Hsieh CM, Ho M, Shern JF, Gulley JL, Hinrichs CS (CIPT, CMI). Cooperative Armoring of CAR and TCR T Cells by T Cell-Restricted IL15 and IL21 Universally Enhances Solid Tumor Efficacy. Clin Cancer Res. 2024 Apr 15; 30(8):1555-1566. DOI: 10.1158/1078-0432.CCR-23-1872.

Hinrichs CS (CIPT, CMI)

Balasubramanian I, Bandyopadhyay S, Flores J, Bianchi-Smak J, Lin X, Liu H, Sun S, Golovchenko NB, Liu Y, Wang D, Patel R, Joseph I, Suntornsaratoon P, Vargas J, Green PH, Bhagat G, Lagana SM, Ying W, Zhang Y, Wang Z, Li WV (GICG), Singh S, Zhou Z (GICG), Kollias G, Farr LA, Zhang L (CIPT), Gao N (CMI), et al. Infection and inflammation stimulate expansion of a CD74+ Paneth cell subset to regulate disease progression. EMBO J. 2023 Nov 02; 42(21):e113975. DOI: 10.15252/embj.2023113975. 2023 Sep 18.

Li WV (GICG),
Zhou Z (GICG),
Zhang L (CIPT),
Gao N (CMI)

Han X, Wang D, Yang L, Wang N, Shen J, Wang J, Zhang L, Chen L, Gao S, Zong WX (CMI), Wang Y. Activation of polyamine catabolism promotes glutamine metabolism and creates a targetable vulnerability in lung cancer. Proc Natl Acad Sci U S A. 2024 Mar 26; 121(13):e2319429121. DOI: 10.1073/pnas.2319429121. 2024 Mar 21.

Zong WX (CMI)

Sakamoto K, Butera MA, Zhou C, Maurizi G, Chen B, Ling L, Shawkat A, Patlolla L, Thakker K, Calle V, Morgan DA, Rahmouni K, Schwartz GJ, Tahiri A, Buettner C (CMI). Overnutrition causes insulin resistance and metabolic disorder through increased sympathetic nervous system activity. Cell Metab. 2024 OCT 15; . DOI: 10.1016/j.cmet.2024.09.012. 2024 Oct 15. PubMed PMID: 39437790.

Buettner C (CMI)

Zhang L, Norberg SM, Karimipour F, Davies JS, Kuznetsov A, Lassoued W, Burnett D, Homan P, Cam M, Sinkoe A, Xue P, Gulley JL, Hinrichs CS (CIPT, CMI). Adoptive transfer of membrane-restricted IL-12-TCR T cells promotes antigen spreading and elimination of antigen-negative tumor variants. J Immunother Cancer. 2024 NOV 18; 12(11). DOI: 10.1136/jitc-2024-009868. 2024 Nov 18. PubMed PMID: 39557544; PMCID: PMC11574437.

Hinrichs CS (CIPT, CMI)

Douglas A, Stevens B, Rendas M, Kane H, Lynch E, Kunkemoeller B, Wessendorf-Rodriguez K, Day EA, Sutton C, Brennan M, O'Brien K, Kohlgruber AC, Prendeville H, Garza AE, O'Neill LAJ, Mills KHG, Metallo CM, Veiga-Fernandes H, Lynch L (CMI). Rhythmic IL-17 production by γδ T cells maintains adipose de novo lipogenesis. Nature. 2024 OCT 30; . DOI: 10.1038/s41586-024-08131-3. 2024 Oct 30. PubMed PMID: 39478228.

Lynch L (CMI)

Yang P, Gao S, Shen J, Liu T, Lu K, Han X, Wang J (CP), Ni HM, Ding WX, Li H (CP), Pan JA, Peng K, Zong WX (CMI). TRIM21-mediated ubiquitination of SQSTM1/p62 abolishes its Ser403 phosphorylation and enhances palmitic acid cytotoxicity. Autophagy. 2024 SEP 10; :1-13. DOI: 10.1080/15548627.2024.2394308. 2024 Sep 10. PubMed PMID: 39172027.

Wang J (CP),
Li H (CP),
Zong WX (CMI)

Wu G, Xu T, Zhao N, Lam YY, Ding X, Wei D, Fan J, Shi Y, Li X, Li M, Ji S, Wang X, Fu H, Zhang F, Shi Y, Zhang C, Peng Y, Zhao L (CMI). A core microbiome signature as an indicator of health. Cell. 2024 OCT 07; . DOI: 10.1016/j.cell.2024.09.019. 2024 Oct 7. PubMed PMID: 39378879.

Zhao L (CMI)

Balaich J, Estrella M, Wu G, Jeffrey PD, Biswas A, Zhao L, Korennykh A (CMG), Donia MS (CMG). The human microbiome encodes resistance to the antidiabetic drug acarbose. Nature. 2021 DEC 01; 600(7887):110-115. DOI: 10.1038/s41586-021-04091-0. 2021 Nov 24. PubMed PMID: 34819672.

Zhao, L (CMI),
Korennykh, A.V (CMI),
Donia, M.S. (CMI)

Chen L, Lu W, Wang L, Xing X, Chen Z, Teng X, Zeng X, Muscarella AD, Shen Y, Cowan A, McReynolds MR, Kennedy BJ, Lato AM, Campagna SR, Singh M (GICG), Rabinowitz JD (CMG). Metabolite discovery through global annotation of untargeted metabolomics data. Nat Methods. 2021 NOV 01; 18(11):1377-1385. DOI: 10.1038/s41592-021-01303-3. 2021 Oct 28. PubMed PMID: 34711973; PMCID: PMC8733904.

Rabinowitz, J.D. (CMI)

Wang L, Xing X, Zeng X, Jackson SR, TeSlaa T, Al-Dalahmah O, Samarah LZ, Goodwin K, Yang L, McReynolds MR, Li X, Wolff JJ, Rabinowitz JD (CMG), Davidson SM (CMG). Spatially resolved isotope tracing reveals tissue metabolic activity. Nat Methods. 2022 FEB 01; 19(2):223-230. DOI: 10.1038/s41592-021-01378-y. 2022 Feb 7. PubMed PMID: 35132243.

Rabinowitz, J.D. (CMI),
Davidson, S.M. (CMI)

Zeng X, Xing X, Gupta M, Keber FC, Lopez JG, Lee YJ, Roichman A, Wang L, Neinast MD, Donia MS (CMG), Wühr M (CP), Jang C, Rabinowitz JD (CMG). Gut bacterial nutrient preferences quantified in vivo. Cell. 2022 Sep 1;185(18):3441-3456.e19. doi: 10.1016/j.cell.2022.07.020. PMID: 36055202; PMCID: PMC9450212.

Rabinowitz, J.D. (CMI), Donia, M.S. (CMI)

Shen M, Smith HA, Wei Y, Jiang YZ, Zhao S, Wang N, Rowicki M, Tang Y, Hang X, Wu S, Wan L, Shao ZM, Kang Y (CMG). Pharmacological disruption of the MTDH-SND1 complex enhances tumor antigen presentation and synergizes with anti-PD-1 therapy in metastatic breast cancer. Nat Cancer. 2022 JAN 01; 3(1):60-74. DOI: 10.1038/s43018-021-00280-y. 2021 Nov 29. PubMed PMID: 35121988; PMCID: PMC8818088.

Kang, Y (CMI)

Shen M, Wei Y, Kim H (CP), Wan L, Jiang YZ, Hang X, Raba M, Remiszewski S, Rowicki M, Wu CG, Wu S, Zhang L, Lu X, Yuan M, Smith HA, Zheng A, Bertino J (CP), Jin JF, Xing Y, Shao ZM, Kang Y (CMG). Small-molecule inhibitors that disrupt the MTDH-SND1 complex suppress breast cancer progression and metastasis. Nat Cancer. 2022 JAN 01; 3(1):43-59. DOI: 10.1038/s43018-021-00279-5. 2021 Nov 29. PubMed PMID: 35121987; PMCID: PMC8818087.

Kang, Y (CMI)

Sharma S, Yang J, Grudzien-Nogalska E, Shivas J, Kwan KY, Kiledjian M (CMG). Xrn1 is a deNADding enzyme modulating mitochondrial NAD-capped RNA. Nat Commun. 2022 FEB 16; 13(1):889. DOI: 10.1038/s41467-022-28555-7. 2022 Feb 16. PubMed PMID: 35173156; PMCID: PMC8850482.

Kiledjian, M (CMI)

Guzman S, Dragan M, Kwon H, de Oliveira V, Rao S, Bhatt V, Kalemba KM, Shah A, Rustgi VK, Wang H (CIPT), Bech PR, Abbara A, Izzi-Engbeaya C, Manousou P, Guo JY (CMG), Guo GL (CMG), Radovick S (CMG), Dhillo WS, Wondisford FE (CMG), Babwah AV, Bhattacharya M (CMG). Targeting hepatic kisspeptin receptor ameliorates nonalcoholic fatty liver disease in a mouse model. J Clin Invest. 2022 MAY 16; 132(10). DOI: 10.1172/JCI145889. PubMed PMID: 35349482; PMCID: PMC9106350.

Guo, Y (CMI),
Guo, G.L. (CMI),
Radovick, S (CMI),
Wondisford, F.E. (CMI),
Bhattacharya, M (CMI)

Palmer MA, Nerger BA, Goodwin K, Sudhakar A, Lemke SB, Ravindran PT, Toettcher JE (CMG), Košmrlj A, Nelson CM (CMG). Stress ball morphogenesis: How the lizard builds its lung. Sci Adv. 2021 DEC 24; 7(52):eabk0161. DOI: 10.1126/sciadv.abk0161. 2021 Dec 22. PubMed PMID: 34936466; PMCID: PMC8694616.

Toettcher, J.E. (CMI),
Nelson, C.M. (CMI)

Davies JS, Karimipour F, Zhang L, Nagarsheth N, Norberg S, Serna C, Strauss J, Chiou S, Gulley JL, Hinrichs CS (CMG). Non-synergy of PD-1 blockade with T-cell therapy in solid tumors. J Immunother Cancer. 2022 JUL 01; 10(7). DOI: 10.1136/jitc-2022-004906. PubMed PMID: 35793866; PMCID: PMC9260838.

Hinrichs, C (CMI, CIPT)

Ghergurovich JM, Xu X, Wang JZ, Yang L, Ryseck RP, Wang L, Rabinowitz JD (CMG). Methionine synthase supports tumour tetrahydrofolate pools. Nat Metab. 2021 NOV 01; 3(11):1512-1520. DOI: 10.1038/s42255-021-00465-w. 2021 Nov 18. PubMed PMID: 34799699; PMCID: PMC9284419.

Rabinowitz, J.D. (CMI)

Li X, Hui S, Mirek ET, Jonsson WO, Anthony TG (CMG), Lee WD, Zeng X, Jang C, Rabinowitz JD (CMG). Circulating metabolite homeostasis achieved through mass action. Nat Metab. 2022 JAN 01; 4(1):141-152. DOI: 10.1038/s42255-021-00517-1. 2022 Jan 20. PubMed PMID: 35058631; PMCID: PMC9244777.

Rabinowitz, J.D. (CMI),
Anthony, T.G. (CMI)

Zhang Z, TeSlaa T, Xu X, Zeng X, Yang L, Xing G, Tesz GJ, Clasquin MF, Rabinowitz JD (CMG). Serine catabolism generates liver NADPH and supports hepatic lipogenesis. Nat Metab. 2021 DEC 01; 3(12):1608-1620. DOI: 10.1038/s42255-021-00487-4. 2021 Nov 29. PubMed PMID: 34845393; PMCID: PMC8721747.

Rabinowitz, J.D. (CMI)

Dai W, Shen J, Yan J, Bott AJ, Maimouni S, Daguplo HQ, Wang Y, Khayati K, Guo JY (CMG), Zhang L (CIPT), Wang Y, Valvezan A (CMG), Ding WX, Chen X, Su X (CMG), Gao S, Zong WX (CMG). Glutamine synthetase limits β-catenin-mutated liver cancer growth by maintaining nitrogen homeostasis and suppressing mTORC1. J Clin Invest. 2022 Dec 15;132(24):e161408. doi: 10.1172/JCI161408. PMID: 36256480; PMCID: PMC9754002.

Guo, Y (CMI),
Valvezan, A.J. (CMI),
Su, X (CMI),
Zong, W-X (CMI)

Chitrakar A, Solorio-Kirpichyan K, Prangley E, Rath S, Du J, Korennykh A (CMG). Introns encode dsRNAs undetected by RIG-I/MDA5/interferons and sensed via RNase L. Proc Natl Acad Sci U S A. 2021 NOV 16; 118(46). DOI: 10.1073/pnas.2102134118. PubMed PMID: 34772806; PMCID: PMC8609619.

Korennykh, A.V. (CMI)

Du J, Estrella M, Solorio-Kirpichyan K, Jeffrey PD, Korennykh A (CMG). Structure of human NADK2 reveals atypical assembly and regulation of NAD kinases from animal mitochondria. Proc Natl Acad Sci U S A. 2022 JUN 28; 119(26):e2200923119. DOI: 10.1073/pnas.2200923119. 2022 Jun 21. PubMed PMID: 35733246; PMCID: PMC9245612.

Korennykh, A.V. (CMI)

Nofal M, Wang T, Yang L, Jankowski CSR, Hsin-Jung Li S, Han S, Parsons L, Frese AN, Gitai Z (CMG), Anthony TG (CMG), Wühr M (CP), Sabatini DM, Rabinowitz JD (CMG). GCN2 adapts protein synthesis to scavenging-dependent growth. Cell Syst. 2022 FEB 16; 13(2):158-172.e9. DOI: 10.1016/j.cels.2021.09.014. 2021 Oct 26. PubMed PMID: 34706266; PMCID: PMC8961722.

Gitai, Z (CMI),
Anthony, T.G. (CMI),
Rabinowitz, J.D. (CMI)

Farahani PE, Lemke SB, Dine E, Uribe G, Toettcher JE (CMG), Nelson CM (CMG). Substratum stiffness regulates Erk signaling dynamics through receptor-level control. Cell Rep. 2021 DEC 28; 37(13):110181. DOI: 10.1016/j.celrep.2021.110181. PubMed PMID: 34965432; PMCID: PMC8756379.

Toettcher, J.E. (CMI),
Nelson, C.M. (CMI)

Onken B, Sedore CA, Coleman-Hulbert AL, Hall D, Johnson E, Jones EG, Banse SA, Huynh P, Guo S, Xue J, Chen E, Harinath G, Foulger AC, Chao EA, Hope J, Bhaumik D, Plummer T, Inman D, Morshead M, Guo M, Lithgow GJ, Phillips PC, Driscoll M (CMG). Metformin treatment of diverse Caenorhabditis species reveals the importance of genetic background in longevity and healthspan extension outcomes. Aging Cell. 2022 JAN 01; 21(1):e13488. DOI: 10.1111/acel.13488. 2021 Nov 27. PubMed PMID: 34837316; PMCID: PMC8761014.

Driscoll, M.A. (CMI)

Yue X, Wang J, Chang CY, Liu J, Yang X, Zhou F, Qiu X, Bhatt V, Guo JY (CMG), Su X (CMG), Zhang L, Feng Z (GICG), Hu W (GICG). Leukemia inhibitory factor drives glucose metabolic reprogramming to promote breast tumorigenesis. Cell Death Dis. 2022 APR 19; 13(4):370. DOI: 10.1038/s41419-022-04820-x. 2022 Apr 19. PubMed PMID: 35440095; PMCID: PMC9018736.

Guo, Y (CMI),
Su, X (CMI),
Hu, W (CMI)

Das S, Feng Q, Balasubramanian I, Lin X, Liu H, Pellón-Cardenas O, Yu S, Zhang X, Liu Y, Wei Z, Bonder EM, Verzi MP (GICG), Hsu W, Zhang L, Wang TC, Gao N (CMG). Colonic healing requires Wnt produced by epithelium as well as Tagln+ and Acta2+ stromal cells. Development. 2022 JAN 01; 149(1). DOI: 10.1242/dev.199587. 2022 Jan 12. PubMed PMID: 34910127; PMCID: PMC8881740.

Gao, N (CMI)

Huo Y, Sawant A, Tan Y, Mahdi AH, Li T, Ma H, Bhatt V, Yan R, Coleman J, Dreyfus CF, Guo JY (CMG), Mouradian MM (CMG), White E (CMG), Xia B (GICG). Tumor suppressor PALB2 maintains redox and mitochondrial homeostasis in the brain and cooperates with ATG7/autophagy to suppress neurodegeneration. PLoS Genet. 2022 APR 01; 18(4):e1010138. DOI: 10.1371/journal.pgen.1010138. 2022 Apr 11. PubMed PMID: 35404932; PMCID: PMC9022806.

Guo, Y (CMI),
Mouradian, M (CMI),
White, E (CMI)

Wang L, Shannar AAF, Wu R, Chou P, Sarwar MS, Kuo HC, Peter RM, Wang Y, Su X (CMG), Kong AN. Butyrate Drives Metabolic Rewiring and Epigenetic Reprogramming in Human Colon Cancer Cells. Mol Nutr Food Res. 2022 JUN 01; 66(12):e2200028. DOI: 10.1002/mnfr.202200028. 2022 Apr 28. PubMed PMID: 35429118; PMCID: PMC9233026.

Su, X (CMI)

Malhotra J (CIPT), Ryan B, Patel M, Chan N (CIPT), Guo Y (CMG), Aisner J (CIPT), Jabbour SK (CIPT), Pine S (GICG). Clinical outcomes and immune phenotypes associated with STK11 co-occurring mutations in non-small cell lung cancer. J Thorac Dis. 2022 JUN 01; 14(6):1772-1783. DOI: 10.21037/jtd-21-1377. PubMed PMID: 35813711; PMCID: PMC9264081.

Guo, Y (CMI)

Krzyzanowska AK, Haynes Ii RAH, Kovalovsky D, Lin HC, Osorio L, Edelblum KL, Corcoran LM, Rabson AB, Denzin LK (CMG), Sant'Angelo DB (CMG). Zbtb20 identifies and controls a thymus-derived population of regulatory T cells that play a role in intestinal homeostasis. Sci Immunol. 2022 MAY 06; 7(71):eabf3717. DOI: 10.1126/sciimmunol.abf3717. 2022 May 6. PubMed PMID: 35522722.

Rabson, A.B. (CMI),
Denzin, L.K. (CMI),
Sant’Angelo, D.B. (CMI)

Ghaddar B, Biswas A, Harris C, Omary MB, Carpizo DR, Blaser MJ, De S. Tumor microbiome links cellular programs and immunity in pancreatic cancer. Cancer Cell. 2022;40(10):1240-53.e5. doi: 10.1016/j.ccell.2022.09.009. PubMed PMID: 36220074; PMCID: PMC9556978.

Blaser MJ (CMI),
De S (GICG)

Jankowski CSR, Rabinowitz JD. Selenium Modulates Cancer Cell Response to Pharmacologic Ascorbate. Cancer Res. 2022;82(19):3486-98. doi: 10.1158/0008-5472.Can-22-0408. PubMed PMID: 35916672; PMCID: PMC9532358.

Rabinowitz JD (CMI)

Li ML, Ragupathi A, Patel N, Hernandez T, Magsino J, Werlen G, Brewer G, Jacinto E. The RNA-binding protein AUF1 facilitates Akt phosphorylation at the membrane. J Biol Chem. 2022;298(10):102437. doi: 10.1016/j.jbc.2022.102437. PubMed PMID: 36041631; PMCID: PMC9513781.

Brewer G (ZY),
Jacinto E (CMI)

Zeng X, Xing X, Gupta M, Keber FC, Lopez JG, Lee YJ, Roichman A, Wang L, Neinast MD, Donia MS, Wühr M, Jang C, Rabinowitz JD. Gut bacterial nutrient preferences quantified in vivo. Cell. 2022;185(18):3441-56.e19. doi: 10.1016/j.cell.2022.07.020. PubMed PMID: 36055202; PMCID: PMC9450212.

Donia MS (CMI),
Wühr M (CP),
Rabinowitz JD (CMI)

Peng J, Qin C, Ramatchandirin B, Pearah A, Guo S, Hussain M, Yu L, Wondisford FE, He L. Activation of the canonical ER stress IRE1-XBP1 pathway by insulin regulates glucose and lipid metabolism. J Biol Chem. 2022;298(9):102283. doi: 10.1016/j.jbc.2022.102283. PubMed PMID: 35863429; PMCID: PMC9396404.

Wondisford FE (CMI)

Sharma S, Yang J, Doamekpor SK, Grudizen-Nogalska E, Tong L, Kiledjian M. Identification of a novel deFADding activity in human, yeast and bacterial 5' to 3' exoribonucleases. Nucleic Acids Res. 2022;50(15):8807-17. doi: 10.1093/nar/gkac617. PubMed PMID: 35904778; PMCID: PMC9410882.

Kiledjian M (CMI)

Yin Z, Bird JG, Kaelber JT, Nickels BE, Ebright RH. In transcription antitermination by Qλ, NusA induces refolding of Qλ to form a nozzle that extends the RNA polymerase RNA-exit channel. Proc Natl Acad Sci U S A. 2022;119(33):e2205278119. doi: 10.1073/pnas.2205278119. PubMed PMID: 35951650; PMCID: PMC9388147.

Kaelber JT (CP),
Nickels BE (CMI)

Tomer D, Arriagada C, Munshi S, Alexander BE, French B, Vedula P, Caorsi V, House A, Guvendiren M, Kashina A, Schwarzbauer JE, Astrof S. A new mechanism of fibronectin fibril assembly revealed by live imaging and super-resolution microscopy. J Cell Sci. 2022;135(16). doi: 10.1242/jcs.260120. PubMed PMID: 35851804; PMCID: PMC9481930.

Schwarzbauer JE (CMI)

Xian H, Watari K, Sanchez-Lopez E, Offenberger J, Onyuru J, Sampath H, Ying W, Hoffman HM, Shadel GS, Karin M. Oxidized DNA fragments exit mitochondria via mPTP- and VDAC-dependent channels to activate NLRP3 inflammasome and interferon signaling. Immunity. 2022;55(8):1370-85.e8. doi: 10.1016/j.immuni.2022.06.007. PubMed PMID: 35835107; PMCID: PMC9378606.

Sampath H (CMI)

Xiao Q, Zhang X, Tu L, Cao J, Hinrichs CS, Su X. Size-dependent activation of CAR-T cells. Sci Immunol. 2022;7(74):eabl3995. doi: 10.1126/sciimmunol.abl3995. PubMed PMID: 35930653; PMCID: PMC9678385.

Cao J (CMI),
Hinrichs CS (CIPT, CMI)

Gomes MT, Palasiewicz K, Gadiyar V, Lahey K, Calianese D, Birge RB, Ucker DS. Phosphatidylserine externalization by apoptotic cells is dispensable for specific recognition leading to innate apoptotic immune responses. J Biol Chem. 2022;298(7):102034. doi: 10.1016/j.jbc.2022.102034. PubMed PMID: 35588784; PMCID: PMC9234239.

Birge RB (CMI)

Jonsson WO, Mirek ET, Wek RC, Anthony TG. Activation and execution of the hepatic integrated stress response by dietary essential amino acid deprivation is amino acid specific. Faseb j. 2022;36(7):e22396. doi: 10.1096/fj.202200204RR. PubMed PMID: 35690926; PMCID: PMC9204950.

Anthony TG (CMI)

Badeti S, Jiang Q, Naghizadeh A, Tseng HC, Bushkin Y, Marras SAE, Nisa A, Tyagi S, Chen F, Romanienko P, Yehia G, Evans D, Lopez-Gonzalez M, Alland D, Russo R, Gause W, Shi L, Liu D. Development of a novel human CD147 knock-in NSG mouse model to test SARS-CoV-2 viral infection. Cell Biosci. 2022;12(1):88. doi: 10.1186/s13578-022-00822-6. PubMed PMID: 35690792; PMCID: PMC9187929.

Tyagi S (CP),
Liu D (CMI)

Pukhrambam C, Molodtsov V, Kooshkbaghi M, Tareen A, Vu H, Skalenko KS, Su M, Yin Z, Winkelman JT, Kinney JB, Ebright RH, Nickels BE. Structural and mechanistic basis of σ-dependent transcriptional pausing. Proc Natl Acad Sci U S A. 2022;119(23):e2201301119. doi: 10.1073/pnas.2201301119. PubMed PMID: 35653571; PMCID: PMC9191641.

Nickels BE (CMI)

Yang Y, Gomez M, Marsh T, Poillet-Perez L, Sawant A, Chen L, Park NR, Jackson SR, Hu Z, Alon N, Liu C, Debnath J, Guan JL, Davidson S, Verzi M, White E. Autophagy in PDGFRα+ mesenchymal cells is essential for intestinal stem cell survival. Proc Natl Acad Sci U S A. 2022;119(21):e2202016119. doi: 10.1073/pnas.2202016119. PubMed PMID: 35537042; PMCID: PMC9173755.

Liu C (CIPT),
Davidson S (CMI),
Verzi M (GICG),
White E (CMI)

Koch MD, Black ME, Han E, Shaevitz JW, Gitai Z. Pseudomonas aeruginosa distinguishes surfaces by stiffness using retraction of type IV pili. Proc Natl Acad Sci U S A. 2022;119(20):e2119434119. doi: 10.1073/pnas.2119434119. PubMed PMID: 35561220; PMCID: PMC9171759.

Gitai Z (CMI)

Krzyzanowska AK, Haynes Ii RAH, Kovalovsky D, Lin HC, Osorio L, Edelblum KL, Corcoran LM, Rabson AB, Denzin LK, Sant'Angelo DB. Zbtb20 identifies and controls a thymus-derived population of regulatory T cells that play a role in intestinal homeostasis. Sci Immunol. 2022;7(71):eabf3717. doi: 10.1126/sciimmunol.abf3717. PubMed PMID: 35522722; PMCID: PMC9709958.

Denzin LK (CMI), Sant'Angelo DB (CMI)

Shekhtman L, Cotler SJ, Ploss A, Dahari H. Mathematical modeling suggests that entry-inhibitor bulevirtide may interfere with hepatitis D virus clearance from circulation. J Hepatol. 2022;76(5):1229-31. doi: 10.1016/j.jhep.2021.12.030. PubMed PMID: 34995688; PMCID: PMC9018506.

Ploss A (CMI)

Ebert SM, Rasmussen BB, Judge AR, Judge SM, Larsson L, Wek RC, Anthony TG, Marcotte GR, Miller MJ, Yorek MA, Vella A, Volpi E, Stern JI, Strub MD, Ryan Z, Talley JJ, Adams CM. Biology of Activating Transcription Factor 4 (ATF4) and Its Role in Skeletal Muscle Atrophy. J Nutr. 2022;152(4):926-38. doi: 10.1093/jn/nxab440. PubMed PMID: 34958390; PMCID: PMC8970988.

Anthony TG (CMI)

Wang R, Suzuki S, Guest JD, Heller B, Almeda M, Andrianov AK, Marin A, Mariuzza RA, Keck ZY, Foung SKH, Yunus AS, Pierce BG, Toth EA, Ploss A, Fuerst TR. Induction of broadly neutralizing antibodies using a secreted form of the hepatitis C virus E1E2 heterodimer as a vaccine candidate. Proc Natl Acad Sci U S A. 2022;119(11):e2112008119. doi: 10.1073/pnas.2112008119. PubMed PMID: 35263223; PMCID: PMC8931252.

Ploss A (CMI)

Lin X, Liu H, Wei Z, Roy SB, Gao N. An active learning approach for clustering single-cell RNA-seq data. Lab Invest. 2022;102(3):227-35. doi: 10.1038/s41374-021-00639-w. PubMed PMID: 34244616; PMCID: PMC8742847.

Gao N (CMI)

Ravindran PT, McFann S, Thornton RH, Toettcher JE. A synthetic gene circuit for imaging-free detection of signaling pulses. Cell Syst. 2022;13(2):131-42.e13. doi: 10.1016/j.cels.2021.10.002. PubMed PMID: 34739875; PMCID: PMC8857027.

Toettcher JE (CMI)

Farahani PE, Nelson CM. Revealing epithelial morphogenetic mechanisms through live imaging. Curr Opin Genet Dev. 2022;72:61-8. doi: 10.1016/j.gde.2021.10.007. PubMed PMID: 34864332; PMCID: PMC8860867.

Nelson CM (CMI)

Wilke AC, Doebele C, Zindel A, Lee KS, Rieke SA, Ceribelli M, Comoglio F, Phelan JD, Wang JQ, Pikman Y, Jahn D, Häupl B, Schneider C, Scheich S, Tosto FA, Bohnenberger H, Stauder P, Schnütgen F, Slabicki M, Coulibaly ZA, Wolf S, Bojarczuk K, Chapuy B, Brandts CH, Stroebel P, Lewis CA, Engelke M, Xu X, Kim H, Dang TH, et al. SHMT2 inhibition disrupts the TCF3 transcriptional survival program in Burkitt lymphoma. Blood. 2022;139(4):538-53. doi: 10.1182/blood.2021012081. PubMed PMID: 34624079; PMCID: PMC8938936.

Kim H (CP),
Rabinowitz JD (CMI)

Jaslove JM, Goodwin K, Sundarakrishnan A, Spurlin JW, Mao S, Košmrlj A, Nelson CM. Transmural pressure signals through retinoic acid to regulate lung branching. Development. 2022;149(2). doi: 10.1242/dev.199726. PubMed PMID: 35051272; PMCID: PMC8917413.

Nelson CM (CMI)

Martinez W, Zhang Q, Linden MA, Schacher N, Darvish S, Mirek ET, Levy JL, Jonsson WO, Anthony TG, Hamilton KL. Rates of protein synthesis are maintained in brain but reduced in skeletal muscle during dietary sulfur amino acid restriction. Front Aging. 2022;3:975129. doi: 10.3389/fragi.2022.975129. PubMed PMID: 36091469; PMCID: PMC9450999.

Anthony TG (CMI)

Kong B, Rizzolo D, Taylor RE, Guo GL. Bile Acid Profiling in Mouse Biofluids and Tissues. Methods Mol Biol. 2022;2455:305-18. doi: 10.1007/978-1-0716-2128-8_23. PubMed PMID: 35213003; PMCID: PMC8922367.

Guo GL (CMI)

Kumar S, Gao N. A Scalable Human Intestinal Planar Culture Offers Opportunities for High-throughput Drug Testing. Cell Mol Gastroenterol Hepatol. 2022;14(2):407-8. doi: 10.1016/j.jcmgh.2022.05.001. PubMed PMID: 35640717; PMCID: PMC9305003.

Gao N (CMI)

Hill KE, Lovett BM, Schwarzbauer JE. Heparan sulfate is necessary for the early formation of nascent fibronectin and collagen I fibrils at matrix assembly sites. J Biol Chem. 2022;298(1):101479. doi: 10.1016/j.jbc.2021.101479. PubMed PMID: 34890641; PMCID: PMC8801470.

Schwarzbauer JE (CMI)

Zhang S, Zhou YF, Cao J, Burley SK, Wang HY, Zheng XFS. mTORC1 Promotes ARID1A Degradation and Oncogenic Chromatin Remodeling in Hepatocellular Carcinoma. Cancer Res. 2021;81(22):5652-65. doi: 10.1158/0008-5472.Can-21-0206. PubMed PMID: 34429326; PMCID: PMC8595749.

Cao J (CMI),
Burley SK (CP),
Zheng XFS (CP)

da Silva-Diz V, Cao B, Lancho O, Chiles E, Alasadi A, Aleksandrova M, Luo S, Singh A, Tao H, Augeri D, Minuzzo S, Indraccolo S, Khiabanian H, Su X, Jin S, Herranz D. A novel and highly effective mitochondrial uncoupling drug in T-cell leukemia. Blood. 2021;138(15):1317-30. doi: 10.1182/blood.2020008955. PubMed PMID: 33876224; PMCID: PMC8525334.

Khiabanian H (GICG),
Su X (CMI),
Jin S (CP),
Herranz D (CP)

Barth VC, Chauhan U, Zeng J, Su X, Zheng H, Husson RN, Woychik NA. Mycobacterium tuberculosis VapC4 toxin engages small ORFs to initiate an integrated oxidative and copper stress response. Proc Natl Acad Sci U S A. 2021;118(32). doi: 10.1073/pnas.2022136118. PubMed PMID: 34362841; PMCID: PMC8364209.

Su X (CMI),
Woychik NA (CMI)

Hou K, Shen J, Yan J, Zhai C, Zhang J, Pan JA, Zhang Y, Jiang Y, Wang Y, Lin RZ, Cong H, Gao S, Zong WX. Loss of TRIM21 alleviates cardiotoxicity by suppressing ferroptosis induced by the chemotherapeutic agent doxorubicin. EBioMedicine. 2021;69:103456. doi: 10.1016/j.ebiom.2021.103456. PubMed PMID: 34233258; PMCID: PMC8261003.

Zong WX (CMI)

Yang M, Hu X, Bao W, Zhang X, Lin Y, Stanton S, Haffty B, Hu W, Kang Y, Wei S, Zhang L. Changing trends and disparities in 5-year overall survival of women with invasive breast cancer in the United States, 1975-2015. Am J Cancer Res. 2021;11(6):3201-11. PubMed PMID: 34249455; PMCID: PMC8263668.

Lin Y (CPC),
Haffty B (CIPT),
Hu W (GICG),
Kang Y (CMI),
Zhang L (CIPT)

Scheffler RJ, Sugimoto Y, Bratton BP, Ellison CK, Koch MD, Donia MS, Gitai Z. Pseudomonas aeruginosa detachment from surfaces via a self-made small molecule. J Biol Chem. 2021;296:100279. doi: 10.1016/j.jbc.2021.100279. PubMed PMID: 33450229; PMCID: PMC7949062.

Donia MS (CMI),
Gitai Z (CMI)

Liu Y, Gokhale S, Jung J, Zhu S, Luo C, Saha D, Guo JY, Zhang H, Kyin S, Zong WX, White E, Xie P. Mitochondrial Fission Factor Is a Novel Interacting Protein of the Critical B Cell Survival Regulator TRAF3 in B Lymphocytes. Front Immunol. 2021;12:670338. doi: 10.3389/fimmu.2021.670338. PubMed PMID: 34745083; PMCID: PMC8564014.

Guo JY (CMI),
Zong WX (CMI),
White E (CMI)

Ye C, Liu B, Lu H, Liu J, Rabson AB, Jacinto E, Pestov DG, Shen Z. BCCIP is required for nucleolar recruitment of eIF6 and 12S pre-rRNA production during 60S ribosome biogenesis. Nucleic Acids Res. 2020;48(22):12817-32. doi: 10.1093/nar/gkaa1114. PubMed PMID: 33245766; PMCID: PMC7736804.

Jacinto E (CMI),
Pestov DG (GICG),
Shen Z (GICG)

Zheng Y, Chen Z, Han Y, Han L, Zou X, Zhou B, Hu R, Hao J, Bai S, Xiao H, Li WV, Bueker A, Ma Y, Xie G, Yang J, Chen S, Li H, Cao J, Shen L. Immune suppressive landscape in the human esophageal squamous cell carcinoma microenvironment. Nat Commun. 2020;11(1):6268. doi: 10.1038/s41467-020-20019-0. PubMed PMID: 33293583; PMCID: PMC7722722.

Li WV (GICG),
Cao J (CMI)

Pham K, Huynh D, Le L, Delitto D, Yang L, Huang J, Kang Y, Steinberg MB, Li J, Zhang L, Liu D, Tang MS, Liu C, Wang H. E-cigarette promotes breast carcinoma progression and lung metastasis: Macrophage-tumor cells crosstalk and the role of CCL5 and VCAM-1. Cancer Lett. 2020;491:132-45. doi: 10.1016/j.canlet.2020.08.010. PubMed PMID: 32829009; PMCID: PMC9703643.

Kang Y (CMI),
Steinberg MB (CIPT), Zhang L (CIPT),
Liu D (CMI),
Wang H (CIPT)

Tseng HC, Xiong W, Badeti S, Yang Y, Ma M, Liu T, Ramos CA, Dotti G, Fritzky L, Jiang JG, Yi Q, Guarrera J, Zong WX, Liu C, Liu D. Efficacy of anti-CD147 chimeric antigen receptors targeting hepatocellular carcinoma. Nat Commun. 2020;11(1):4810. doi: 10.1038/s41467-020-18444-2. PubMed PMID: 32968061; PMCID: PMC7511348.

Zong WX (CMI),
Liu D (CMI)

Poillet-Perez L, Sharp DW, Yang Y, Laddha SV, Ibrahim M, Bommareddy PK, Hu ZS, Vieth J, Haas M, Bosenberg MW, Rabinowitz JD, Cao J, Guan JL, Ganesan S, Chan CS, Mehnert JM, Lattime EC, White E. Autophagy promotes growth of tumors with high mutational burden by inhibiting a T-cell immune response. Nat Cancer. 2020;1(9):923-34. doi: 10.1038/s43018-020-00110-7. PubMed PMID: 34476408; PMCID: PMC8409526.

Rabinowitz JD (CMI),
Cao J (CMI),
Ganesan S (CIPT),
Chan CS (GICG),
Mehnert JM (CIPT), Lattime EC (CMI),
White E (CMI)

Wang H, Wang J, Zhao Y, Zhang X, Liu J, Zhang C, Haffty B, Verzi M, Zhang L, Gao N, Feng Z, Hu W. LIF is essential for ISC function and protects against radiation-induced gastrointestinal syndrome. Cell Death Dis. 2020;11(7):588. doi: 10.1038/s41419-020-02790-6. PubMed PMID: 32719388; PMCID: PMC7385639.

Haffty B (CIPT),
Verzi M (GICG),
Zhang L (CIPT),
Gao N (CMI),
Feng Z (GICG),
Hu W (GICG)

Portal DE, Weiss RE, Wojtowicz M, Mansour A, Monken C, Mehnert JM, Aisner JA, Kane M, Nishioka J, Aisner S, Peters S, Stein MN, Kim IY, Mayer TM, Shih W, Gulley J, Streicher H, Singer EA, Lattime EC. Phase I neoadjuvant study of intravesical recombinant fowlpox-GM-CSF (rF-GM-CSF) or fowlpox-TRICOM (rF-TRICOM) in patients with bladder carcinoma. Cancer Gene Ther. 2020;27(6):438-47. doi: 10.1038/s41417-019-0112-z. PubMed PMID: 31222182; PMCID: PMC6923616.

Mehnert JM (CIPT),
Aisner JA (CIPT),
Kim IY (CIPT),
Mayer TM (CIPT),
Shih W (CIPT),
Singer EA (CIPT),
Lattime EC (CMI)

Dragan M, Nguyen MU, Guzman S, Goertzen C, Brackstone M, Dhillo WS, Bech PR, Clarke S, Abbara A, Tuck AB, Hess DA, Pine SR, Zong WX, Wondisford FE, Su X, Babwah AV, Bhattacharya M. G protein-coupled kisspeptin receptor induces metabolic reprograming and tumorigenesis in estrogen receptor-negative breast cancer. Cell Death Dis. 2020;11(2):106. doi: 10.1038/s41419-020-2305-7. PubMed PMID: 32034133; PMCID: PMC7005685.

Pine SR (GICG),
Zong WX (CMI), Wondisford FE (CMI),
Su X (CMI),
Bhattacharya M (CMI)

Newman JH, Chesson CB, Herzog NL, Bommareddy PK, Aspromonte SM, Pepe R, Estupinian R, Aboelatta MM, Buddhadev S, Tarabichi S, Lee M, Li S, Medina DJ, Giurini EF, Gupta KH, Guevara-Aleman G, Rossi M, Nowicki C, Abed A, Goldufsky JW, Broucek JR, Redondo RE, Rotter D, Jhawar SR, Wang SJ, Kohlhapp FJ, Kaufman HL, Thomas PG, Gupta V, Kuzel TM, et al. Intratumoral injection of the seasonal flu shot converts immunologically cold tumors to hot and serves as an immunotherapy for cancer. Proc Natl Acad Sci U S A. 2020;117(2):1119-28. doi: 10.1073/pnas.1904022116. PubMed PMID: 31888983; PMCID: PMC6969546.

Medina DJ (CIPT),
Singer EA (CIPT),
Malhotra J (CIPT),
Denzin LK (CMI), Sant'Angelo DB (CMI), Lasfar A (CMI),
Langenfeld J (CIPT),
Zloza A (CIPT)

Kalemba KM, Wang Y, Xu H, Chiles E, McMillin SM, Kwon H, Su X, Wondisford FE. Glycerol induces G6pc in primary mouse hepatocytes and is the preferred substrate for gluconeogenesis both in vitro and in vivo. J Biol Chem. 2019;294(48):18017-28. doi: 10.1074/jbc.RA119.011033. PubMed PMID: 31645433; PMCID: PMC6885632.

Su X (CMI),
Wondisford FE (CMI)

Nikonorova IA, Zhu Q, Signore CC, Mirek ET, Jonsson WO, Kong B, Guo GL, Belden WJ, Anthony TG. Age modulates liver responses to asparaginase-induced amino acid stress in mice. J Biol Chem. 2019;294(38):13864-75. doi: 10.1074/jbc.RA119.009864. PubMed PMID: 31413113; PMCID: PMC6755797.

Guo GL (CMI),
Anthony TG (CMI)

Zhang S, Vieth JA, Krzyzanowska A, Henry EK, Denzin LK, Siracusa MC, Sant'Angelo DB. The Transcription Factor PLZF Is Necessary for the Development and Function of Mouse Basophils. J Immunol. 2019;203(5):1230-41. doi: 10.4049/jimmunol.1900068. PubMed PMID: 31366712; PMCID: PMC9710206.

Denzin LK (CMI), Sant'Angelo DB (CMI)

D'Agostino L, Nie Y, Goswami S, Tong K, Yu S, Bandyopadhyay S, Flores J, Zhang X, Balasubramanian I, Joseph I, Sakamori R, Farrell V, Li Q, Yang CS, Gao B, Ferraris RP, Yehia G, Bonder EM, Goldenring JR, Verzi MP, Zhang L, Ip YT, Gao N. Recycling Endosomes in Mature Epithelia Restrain Tumorigenic Signaling. Cancer Res. 2019;79(16):4099-112. doi: 10.1158/0008-5472.Can-18-4075. PubMed PMID: 31239271; PMCID: PMC6726494.

Verzi MP (GICG),
Zhang L (CIPT),
Gao N (CMI)

Darcy PW, Jin K, Osorio L, Denzin LK, Sant'Angelo DB. Coexpression of YY1 Is Required to Elaborate the Effector Functions Controlled by PLZF in NKT Cells. J Immunol. 2019;203(3):627-38. doi: 10.4049/jimmunol.1900055. PubMed PMID: 31227579; PMCID: PMC9710202.

Denzin LK (CMI), Sant'Angelo DB (CMI)

Rizzolo D, Buckley K, Kong B, Zhan L, Shen J, Stofan M, Brinker A, Goedken M, Buckley B, Guo GL. Bile Acid Homeostasis in a Cholesterol 7α-Hydroxylase and Sterol 27-Hydroxylase Double Knockout Mouse Model. Hepatology. 2019;70(1):389-402. doi: 10.1002/hep.30612. PubMed PMID: 30864232; PMCID: PMC7893641.

Buckley B (CP),
Guo GL (CMI)

Wang L, Xing X, Chen L, Yang L, Su X, Rabitz H, Lu W, Rabinowitz JD. Peak Annotation and Verification Engine for Untargeted LC-MS Metabolomics. Anal Chem. 2019;91(3):1838-46. doi: 10.1021/acs.analchem.8b03132. PubMed PMID: 30586294; PMCID: PMC6501219.

Su X (CMI),
Rabitz H (CP),
Rabinowitz JD (CMI)

Silk AW, Kaufman HL, Curti B, Mehnert JM, Margolin K, McDermott D, Clark J, Newman J, Bommareddy PK, Denzin L, Najmi S, Haider A, Shih W, Kane MP, Zloza A. High-Dose Ipilimumab and High-Dose Interleukin-2 for Patients With Advanced Melanoma. Front Oncol. 2019;9:1483. doi: 10.3389/fonc.2019.01483. PubMed PMID: 31998643; PMCID: PMC6965158.

Silk AW (CIPT),
Mehnert JM (CIPT),
Denzin L (CMI),
Shih W (CIPT),
Zloza A (CIPT)

Douam F, Ziegler CGK, Hrebikova G, Fant B, Leach R, Parsons L, Wang W, Gaska JM, Winer BY, Heller B, Shalek AK, Ploss A. Selective expansion of myeloid and NK cells in humanized mice yields human-like vaccine responses. Nat Commun. 2018;9(1):5031. doi: 10.1038/s41467-018-07478-2. PubMed PMID: 30487575; PMCID: PMC6262001.

Ploss A (CMI)

Obr AE, Kumar S, Chang YJ, Bulatowicz JJ, Barnes BJ, Birge RB, Lazzarino DA, Gallagher E, LeRoith D, Wood TL. Insulin-like growth factor receptor signaling in breast tumor epithelium protects cells from endoplasmic reticulum stress and regulates the tumor microenvironment. Breast Cancer Res. 2018;20(1):138. doi: 10.1186/s13058-018-1063-2. PubMed PMID: 30458886; PMCID: PMC6245538.

Birge RB (CMI),
Wood TL (CMI)

Fröhlich KS, Förstner KU, Gitai Z. Post-transcriptional gene regulation by an Hfq-independent small RNA in Caulobacter crescentus. Nucleic Acids Res. 2018;46(20):10969-82. doi: 10.1093/nar/gky765. PubMed PMID: 30165530; PMCID: PMC6237742.

Gitai Z (CMI)

Kong B, Sun R, Huang M, Chow MD, Zhong XB, Xie W, Lee YH, Guo GL. Fibroblast Growth Factor 15-Dependent and Bile Acid-Independent Promotion of Liver Regeneration in Mice. Hepatology. 2018;68(5):1961-76. doi: 10.1002/hep.30041. PubMed PMID: 29672888; PMCID: PMC6195490.

Guo GL (CMI)

Moloughney JG, Vega-Cotto NM, Liu S, Patel C, Kim PK, Wu CC, Albaciete D, Magaway C, Chang A, Rajput S, Su X, Werlen G, Jacinto E. mTORC2 modulates the amplitude and duration of GFAT1 Ser-243 phosphorylation to maintain flux through the hexosamine pathway during starvation. J Biol Chem. 2018;293(42):16464-78. doi: 10.1074/jbc.RA118.003991. PubMed PMID: 30201609; PMCID: PMC6200946.

Su X (CMI),
Jacinto E (CMI)

Perekatt AO, Shah PP, Cheung S, Jariwala N, Wu A, Gandhi V, Kumar N, Feng Q, Patel N, Chen L, Joshi S, Zhou A, Taketo MM, Xing J, White E, Gao N, Gatza ML, Verzi MP. SMAD4 Suppresses WNT-Driven Dedifferentiation and Oncogenesis in the Differentiated Gut Epithelium. Cancer Res. 2018;78(17):4878-90. doi: 10.1158/0008-5472.Can-18-0043. PubMed PMID: 29986996; PMCID: PMC6125228.

Perekatt AO (GICG),
White E (CMI),
Gao N (CMI),
Gatza ML (GICG),
Verzi MP (GICG)

Tanner LB, Goglia AG, Wei MH, Sehgal T, Parsons LR, Park JO, White E, Toettcher JE, Rabinowitz JD. Four Key Steps Control Glycolytic Flux in Mammalian Cells. Cell Syst. 2018;7(1):49-62.e8. doi: 10.1016/j.cels.2018.06.003. PubMed PMID: 29960885; PMCID: PMC6062487.

White E (CMI),
Toettcher JE (CMI), Rabinowitz JD (CMI)

Yu S, Tong K, Zhao Y, Balasubramanian I, Yap GS, Ferraris RP, Bonder EM, Verzi MP, Gao N. Paneth Cell Multipotency Induced by Notch Activation following Injury. Cell Stem Cell. 2018;23(1):46-59.e5. doi: 10.1016/j.stem.2018.05.002. PubMed PMID: 29887318; PMCID: PMC6035085.

Verzi MP (GICG),
Gao N (CMI)

Chakrabarti R, Celià-Terrassa T, Kumar S, Hang X, Wei Y, Choudhury A, Hwang J, Peng J, Nixon B, Grady JJ, DeCoste C, Gao J, van Es JH, Li MO, Aifantis I, Clevers H, Kang Y. Notch ligand Dll1 mediates cross-talk between mammary stem cells and the macrophageal niche. Science. 2018;360(6396). doi: 10.1126/science.aan4153. PubMed PMID: 29773667; PMCID: PMC7881440.

Kang Y (CMI)

Aijaz A, Li M, Smith D, Khong D, LeBlon C, Fenton OS, Olabisi RM, Libutti S, Tischfield J, Maus MV, Deans R, Barcia RN, Anderson DG, Ritz J, Preti R, Parekkadan B. Biomanufacturing for clinically advanced cell therapies. Nat Biomed Eng. 2018;2(6):362-76. doi: 10.1038/s41551-018-0246-6. PubMed PMID: 31011198; PMCID: PMC6594100.

Libutti S (CIPT, GICG), Tischfield J (GICG), Parekkadan B (CMI)

Tsang CK, Chen M, Cheng X, Qi Y, Chen Y, Das I, Li X, Vallat B, Fu LW, Qian CN, Wang HY, White E, Burley SK, Zheng XFS. SOD1 Phosphorylation by mTORC1 Couples Nutrient Sensing and Redox Regulation. Mol Cell. 2018;70(3):502-15.e8. doi: 10.1016/j.molcel.2018.03.029. PubMed PMID: 29727620; PMCID: PMC6108545.

Vallat B (CP),
White E (CMI),
Burley SK (CP),
Zheng XFS (CP)

Vvedenskaya IO, Bird JG, Zhang Y, Zhang Y, Jiao X, Barvík I, Krásný L, Kiledjian M, Taylor DM, Ebright RH, Nickels BE. CapZyme-Seq Comprehensively Defines Promoter-Sequence Determinants for RNA 5' Capping with NAD<sup/>. Mol Cell. 2018;70(3):553-64.e9. doi: 10.1016/j.molcel.2018.03.014. PubMed PMID: 29681497; PMCID: PMC5935523.

Kiledjian M (CMI),
Nickels BE (CMI)

Cetera M, Leybova L, Joyce B, Devenport D. Counter-rotational cell flows drive morphological and cell fate asymmetries in mammalian hair follicles. Nat Cell Biol. 2018;20(5):541-52. doi: 10.1038/s41556-018-0082-7. PubMed PMID: 29662173; PMCID: PMC6065250.

Devenport D (CMI)

Liu L, Su X, Quinn WJ, 3rd, Hui S, Krukenberg K, Frederick DW, Redpath P, Zhan L, Chellappa K, White E, Migaud M, Mitchison TJ, Baur JA, Rabinowitz JD. Quantitative Analysis of NAD Synthesis-Breakdown Fluxes. Cell Metab. 2018;27(5):1067-80.e5. doi: 10.1016/j.cmet.2018.03.018. PubMed PMID: 29685734; PMCID: PMC5932087.

Su X (CMI),
White E (CMI),
Rabinowitz JD (CMI)

Simi AK, Anlaş AA, Stallings-Mann M, Zhang S, Hsia T, Cichon M, Radisky DC, Nelson CM. A Soft Microenvironment Protects from Failure of Midbody Abscission and Multinucleation Downstream of the EMT-Promoting Transcription Factor Snail. Cancer Res. 2018;78(9):2277-89. doi: 10.1158/0008-5472.Can-17-2899. PubMed PMID: 29483094; PMCID: PMC5932229.

Nelson CM (CMI)

Raitman I, Huang ML, Williams SA, Friedman B, Godula K, Schwarzbauer JE. Heparin-fibronectin interactions in the development of extracellular matrix insolubility. Matrix Biol. 2018;67:107-22. doi: 10.1016/j.matbio.2017.11.012. PubMed PMID: 29223498; PMCID: PMC5910196.

Schwarzbauer JE (CMI)

Panda A, Mehnert JM, Hirshfield KM, Riedlinger G, Damare S, Saunders T, Kane M, Sokol L, Stein MN, Poplin E, Rodriguez-Rodriguez L, Silk AW, Aisner J, Chan N, Malhotra J, Frankel M, Kaufman HL, Ali S, Ross JS, White EP, Bhanot G, Ganesan S. Immune Activation and Benefit From Avelumab in EBV-Positive Gastric Cancer. J Natl Cancer Inst. 2018;110(3):316-20. doi: 10.1093/jnci/djx213. PubMed PMID: 29155997; PMCID: PMC6658862.

Mehnert JM (CIPT), Hirshfield KM (GICG), Riedlinger G (CIPT), Rodriguez-Rodriguez L (CIPT),
Silk AW (CIPT),
Aisner J (CIPT),
Chan N (CIPT),
Malhotra J (CIPT),
White EP (CMI),
Bhanot G (GICG),
Ganesan S (CIPT)

Jang C, Hui S, Lu W, Cowan AJ, Morscher RJ, Lee G, Liu W, Tesz GJ, Birnbaum MJ, Rabinowitz JD. The Small Intestine Converts Dietary Fructose into Glucose and Organic Acids. Cell Metab. 2018;27(2):351-61.e3. doi: 10.1016/j.cmet.2017.12.016. PubMed PMID: 29414685; PMCID: PMC6032988.

Rabinowitz JD (CMI)

Arrigucci R, Lakehal K, Vir P, Handler D, Davidow AL, Herrera R, Estrada-Guzmán JD, Bushkin Y, Tyagi S, Lardizabal AA, Gennaro ML. Active Tuberculosis Is Characterized by Highly Differentiated Effector Memory Th1 Cells. Front Immunol. 2018;9:2127. doi: 10.3389/fimmu.2018.02127. PubMed PMID: 30283456; PMCID: PMC6156157.

Tyagi S (CP),
Gennaro ML (CMI)

Zheng H, Bae Y, Kasimir-Bauer S, Tang R, Chen J, Ren G, Yuan M, Esposito M, Li W, Wei Y, Shen M, Zhang L, Tupitsyn N, Pantel K, King C, Sun J, Moriguchi J, Jun HT, Coxon A, Lee B, Kang Y. Therapeutic Antibody Targeting Tumor- and Osteoblastic Niche-Derived Jagged1 Sensitizes Bone Metastasis to Chemotherapy. Cancer Cell. 2017;32(6):731-47.e6. doi: 10.1016/j.ccell.2017.11.002. PubMed PMID: 29232552; PMCID: PMC5729937.

Zhang L (CIPT),
Kang Y (CMI)

Cheng LC, Tan VM, Ganesan S, Drake JM. Integrating phosphoproteomics into the clinical management of prostate cancer. Clinical and translational medicine. 2017;6(1):9. doi: 10.1186/s40169-017-0138-5. PubMed PMID: 28197968; PMCID: PMC5309189.

Ganesan S (CIPT),
Drake JM (CMI)

Liu J, Zhang C, Zhao Y, Yue X, Wu H, Huang S, Chen J, Tomsky K, Xie H, Khella CA, Gatza ML, Xia D, Gao J, White E, Haffty BG, Hu W, Feng Z. Parkin targets HIF-1α for ubiquitination and degradation to inhibit breast tumor progression. Nat Commun. 2017;8(1):1823. doi: 10.1038/s41467-017-01947-w. PubMed PMID: 29180628; PMCID: PMC5703960.

Gatza ML (GICG),
White E (CMI),
Haffty BG (CIPT),
Hu W (GICG),
Feng Z (GICG)