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Researcher Publications

Gyan Bhanot, PhD

Selected Publications

  1. Panda A, de Cubas AA, Stein M, Riedlinger G, Kra J, Mayer T, Smith CC, Vincent BG, Serody JS, Beckermann KE, Ganesan S, Bhanot G, Rathmell WK, Endogenous retrovirus expression is associated with response to immune checkpoint blockade in clear cell renal cell carcinoma. JCI-Insight. 2018 Aug 23;3(16).
  2. Smith CC, Beckermann KE, Bortone DS, de Cubas AA, Bixby LM, Lee SJ, Panda A, Ganesan S, Bhanot G, Wallen EM, Milowsky MI, Kim WY, Rathmell WK, Swanstrom R, Parker JS, Serody JS, Selitsky SR, Vincent BG. Endogenous retroviral signatures predict immunotherapy response in clear cell renal cell carcinoma. J Clin Invest. 2018 Aug 23. pii: 121476. doi: 10.1172/JCI121476. [Epub ahead of print].
  3. Rabadan R, Bhanot G, Marsilio S, Chiorazzi N, Pasqualucci L, Khiabanian H, On statistical modeling of sequencing noise in high depth data to assess tumor evolution, (2017), J Stat Phys (2017). https://doi.org/10.1007/s10955-017-1945-1
  4. Panda A, Betigeri A, Subramanian K, Ross JS, Pavlick DC, Ali S, Markowski P, Silk A, Kaufman H, Mehnert J, Sullivan R, Lovly CM, Sosman J, Johnson DB, Bhanot G, Ganesan S. Identifying a clinically applicable mutation burden threshold as a biomarker of response to Immune Checkpoint Therapy in solid tumors, JCO Precision Oncology 2017: 1, 1-13
  5. Panda A, Mehnert JM, Hirshfield KM, Riedlinger G, Demare S, Saunders T, Kane M, Sokol L, Stein MN, Elizabeth Poplin E, Rodriguez-Rodriguez L, Silk AW, Aisner J, Chan N, Malhotra J, Frankel M, Kaufman HL, Ali S, Ross JS, White EP, Bhanot G, Ganesan S, Immune Activation and Benefit From Avelumab in EBV-Positive Gastric Cancer, J Natl Cancer Inst. 2018, 1;110(3):316-320. doi: 10.1093/jnci/djx213.
  6. Russell LB, Bhanot G, Kim S-Y, Sinha A, Using Cluster Analysis to Group Countries for Cost-Effectiveness Analysis: An Application to sub-Saharan Africa. (2017) Medical Decision Making, 2017 Aug 1:272989X17724773. doi: 10.1177/0272989X17724773. PMID: 28823186
  7. Bjørklund SS, Panda A, Kumar S, Seiler M, Robinson D, Gheeya J, Ming Y, Grenaker Alnæs GI, Toppmeyer D, Riis M, Naume B, Børresen-Dale A-L, Kristensen VN, Ganesan S, Bhanot G. (2017) Widespread alternative exon usage in Clinically distinct subtypes of Invasive Ductal Carcinoma. Scientific Reports 7, Article 5568(2017), doi:10.1038/s41598-017-05537-0.
  8. Mukherjee, G. Bhanot, K. Raines, S. Sastry, S. Doniach and M. Biehl, "Predicting recurrence in clear cell Renal Cell Carcinoma: Analysis of TCGA data using outlier analysis and generalized matrix LVQ," 2016 IEEE Congress on Evolutionary Computation (CEC), Vancouver, BC, Canada, 2016, pp. 656-661. doi: 10.1109/CEC.2016.7743855.
  9. Yadav A, Radhakrishnan A, Panda A, Singh A, Sinha H, Bhanot G (2016) The Modular Adaptive Ribosome. PLoS ONE 11(11): e0166021. doi:10.1371/journal.pone.0166021
  10. Mehnert JM, Panda A, Zhong H, Hirshfield K, Damare S, Lane K, Sokol L, Stein MN, a Rodriguez-Rodriquez L, Kaufman HL, Ali S, Ross JS, Pavlick DC, Bhanot G, White EP, DiPaola RS, Lovell A, Cheng J, Ganesan S. Immune activation and response to pembrolizumab in POLE-mutant endometrial cancer, J Clin. Invest. 2016;126(6):2334-2340. doi:10.1172/JCI84940.
  11. Zhang C, Liu J, Zhao Y, Yue X, Zhu Y, Wang X, Wu H, Blanco F, Li S, Bhanot G, Haffty BG, Hu W, Feng Z, Glutaminase 2 is a novel negative regulator of small GTPase Rac1 and mediates p53 function in suppressing metastasis, eLife, 2016;10.7554/eLife.10727
  12. Bjørklund S, Kristensen V, Seiler M, Kumar S, Alnæs G, Ming Y, Kerrigan J, Naume B, Sachidanandam R, Bhanot G, Børresen-Dale A-L, Ganesan S, Expression of an estrogen-regulated variant transcript of the peroxisomal branched chain fatty acid oxidase ACOX2 in breast carcinomas, BMC Cancer 2015, 15:524. doi: 10.1186/s12885-015-1510-8.
  13. Yadav A, Radhakrishnan A, Bhanot G and Sinha H. Differential Regulation of Antagonistic Pleiotropy in Synthetic and Natural Populations Suggests Its Role in Adaptation. G3: Genes, Genomes, Genetics, May 1, 2015 vol. 5 no. 5 699-709. doi: 10.1534/g3.115.017020.
  14. Davis CF, Ricketts CJ, Wang M, Yang L, Cherniack AD, Shen H, Buhay C, Kang H, Kim SC, Fahey CC, Hacker KE, Bhanot G, Gordenin DA, Chu A, Gunaratne PH, Biehl M, Seth S, Kaipparettu BA, Bristow CA, Donehower LA, Wallen EM, Smith AB, Tickoo SK, Tamboli P, Reuter V, Schmidt LS, Hsieh JJ, Choueiri TK, Hakimi AA; Cancer Genome Atlas Research Network, Chin L, Meyerson M, Kucherlapati R, Park WY, Robertson AG, Laird PW, Henske EP, Kwiatkowski DJ, Park PJ, Morgan M, Shuch B, Muzny D, Wheeler DA, Linehan WM, Gibbs RA, Rathmell WK, Creighton CJ. The somatic genomic landscape of chromophobe renal cell carcinoma. Cancer Cell. 2014 Sep 8;26(3):319-30. doi: 10.1016/j.ccr.2014.07.014. Epub 2014 Aug 21.
  15. Wagh K, Bhatia A, Greenbaum BD, Bhanot G, Bird to Human Transmission Biases and Vaccine Escape Mutants in H5N1 Infections. PLoS One. 2014 Jul 2;9(7):e100754. doi: 10.1371/journal.pone.0100754. eCollection 2014.
  16. Bhatia A, Yadav A, Gagneur J, Zhu C, Steinmetz LM, Bhanot G, Sinha H, (2014). Yeast growth plasticity is regulated by environment specific multi-QTL interactions. G3 (Bethesda). 2014 Jan 28;4(5):769-77. doi: 10.1534/g3.113.009142.
  17. Tomar P, Bhatia A, Ramdas S, Diao L, Bhanot G, Sinha H. (2013) Sporulation Genes Associated with Sporulation Efficiency in Natural Isolates of Yeast. PLoS ONE 8(7): e69765. doi:10. 1371/journal.pone.0069765
  18. Wagh K, Bhatia A, Lukic S, Alexe G, Reddy A, Ravikumar V, Seiler M, Yao M, Boemo M, Cronk L, Naqvi A, Ganesan S, Levine AJ, Bhanot G. Lactase persistence and lipid pathway selection in the Maasai, 2012, PLoS ONE 7(9): e44751.

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