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Eduardo D. Sontag, PhD

Publications since 2011

Bastiaens, P. Birtwistle, M. R. Bluthgen, N. Bruggeman, F. J. Cho, K. H. Cosentino, C. de la Fuente, A. Hoek, J. B. Kiyatkin, A. Klamt, S. Kolch, W. Legewie, S. Mendes, P. Naka, T. Santra, T. Sontag, E. Westerhoff, H. V. Kholodenko, B. N. Silence on the relevant literature and errors in implementation. Nat Biotechnol, 33:336-339, . (PMID: 25850052)

Skataric, M. Nikolaev, E. V. Sontag, E. D. Fundamental limitation of the instantaneous approximation in fold-change detection models. IET Syst Biol, 9:1-15, . (PMID: 25569859)

Sontag, E. D. A technique for determining the signs of sensitivities of steady states in chemical reaction networks. IET Syst Biol, 8:251-267, . (PMID: 25478700)

Prabakaran, S. Gunawardena, J. Sontag, E. Paradoxical results in perturbation-based signaling network reconstruction. Biophys J, 106:2720-2728, . (PMID: 24940789, PMCID: PMC4070074)

Margaliot, M. Sontag, E. D. Tuller, T. Entrainment to periodic initiation and transition rates in a computational model for gene translation. PLoS One, 9:e96039, . (PMID: 24800863, PMCID: PMC4011696)

Segall-Shapiro, T. H. Meyer, A. J. Ellington, A. D. Sontag, E. D. Voigt, C. A. A 'resource allocator' for transcription based on a highly fragmented T7 RNA polymerase. Mol Syst Biol, 10:742, . (PMID: 25080493)

White, A. Lees, B. Kao, H. L. Cipriani, G. Paaby, A. Sontag, E. Erickson, K. Geiger, D. Gunsalus, K. Piano, F. DevStaR: High-throughput quantification of <i>C. elegans</i> developmental stages. IEEE Trans Med Imaging, 32:1791-1803, . (PMID: 23722463)

Kang, T. White, J. T. Xie, Z. Benenson, Y. Sontag, E. Bleris, L. Reverse engineering validation using a benchmark synthetic gene circuit in human cells. ACS Synth Biol, 2:255-262, . (PMID: 23654266, PMCID: PMC3716858)

Aminzare, Z. Sontag, E. D. Logarithmic Lipschitz norms and diffusion-induced instability. Nonlinear Anal Theory Methods Appl, 83:31-49, . (PMID: 23729972, PMCID: PMC3666191)

Barton, J. P. Sontag, E. D. The energy costs of insulators in biochemical networks. Biophys J, 104:1380-1390, . (PMID: 23528097, PMCID: PMC3602777)

Hamadeh, A. Ingalls, B. Sontag, E. Transient dynamic phenotypes as criteria for model discrimination: fold-change detection in Rhodobacter sphaeroides chemotaxis. J R Soc Interface, 10:20120935, . (PMID: 23293140, PMCID: PMC3565743)

Liu, L. Duclos, G. Sun, B. Lee, J. Wu, A. Kam, Y. Sontag, E. D. Stone, H. A. Sturm, J. C. Gatenby, R. A. Austin, R. H. Minimization of thermodynamic costs in cancer cell invasion. Proc Natl Acad Sci U S A, 110:1686-1691, . (PMID: 23319630, PMCID: PMC3562811)

Shimoga, V. White, J. T. Li, Y. Sontag, E. Bleris, L. Synthetic mammalian transgene negative autoregulation. Mol Syst Biol, 9:670, . (PMID: 23736683)

Wood, K. Nishida, S. Sontag, E. D. Cluzel, P. Mechanism-independent method for predicting response to multidrug combinations in bacteria. Proc Natl Acad Sci U S A, 109:12254-12259, . (PMID: 22773816, PMCID: PMC3409729)

Miller, M. Hafner, M. Sontag, E. Davidsohn, N. Subramanian, S. Purnick, P. E. Lauffenburger, D. Weiss, R. Modular Design of Artificial Tissue Homeostasis: Robust Control through Synthetic Cellular Heterogeneity. PLoS Comput Biol, 8:e1002579, . (PMID: 22829755, PMCID: PMC3400602)

Skataric, M. Sontag, E. D. A characterization of scale invariant responses in enzymatic networks. PLoS Comput Biol, 8:e1002748, . (PMID: 23133355, PMCID: PMC3486845)

Albert, R. DasGupta, B. Hegde, R. Sivanathan, G. S. Gitter, A. Gursoy, G. Paul, P. Sontag, E. Computationally efficient measure of topological redundancy of biological and social networks. Phys Rev E Stat Nonlin Soft Matter Phys, 84:036117, . (PMID: 22060466)

Jiang, P. Ventura, A. C. Sontag, E. D. Merajver, S. D. Ninfa, A. J. Del Vecchio, D. Load-induced modulation of signal transduction networks. Sci Signal, 4:ra67, . (PMID: 21990429)

Bleris, L. Xie, Z. Glass, D. Adadey, A. Sontag, E. Benenson, Y. Synthetic incoherent feedforward circuits show adaptation to the amount of their genetic template. Mol Syst Biol, 7:519, . (PMID: 21811230, PMCID: PMC3202791)