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Bryce E. Nickels, PhD

Publications since 2011

Vvedenskaya, I. O. Vahedian-Movahed, H. Bird, J. G. Knoblauch, J. G. Goldman, S. R. Zhang, Y. Ebright, R. H. Nickels, B. E. Transcription. Interactions between RNA polymerase and the "core recognition element" counteract pausing. Science, 344:1285-1289, . (PMID: 24926020)

Vorobiev, S. M. Gensler, Y. Vahedian-Movahed, H. Seetharaman, J. Su, M. Huang, J. Y. Xiao, R. Kornhaber, G. Montelione, G. T. Tong, L. Ebright, R. H. Nickels, B. E. Structure of the DNA-Binding and RNA-Polymerase-Binding Region of Transcription Antitermination Factor lambdaQ. Structure, 22:488-495, . (PMID: 24440517, PMCID: PMC3951671)

Schifano, J. M. Vvedenskaya, I. O. Knoblauch, J. G. Ouyang, M. Nickels, B. E. Woychik, N. A. An RNA-seq method for defining endoribonuclease cleavage specificity identifies dual rRNA substrates for toxin MazF-mt3. Nat Commun, 5:3538, . (PMID: 24709835, PMCID: PMC4090939)

Nickels, B. E. A new way to start: nanoRNA-mediated priming of transcription initiation. Transcription, 3:300-304, . (PMID: 23117822, PMCID: PMC3630185)

Bao, X. Nickels, B. E. Fan, H. Chlamydia trachomatis protein GrgA activates transcription by contacting the nonconserved region of sigma66. Proc Natl Acad Sci U S A, 109:16870-16875, . (PMID: 23027952, PMCID: PMC3479454)

Vvedenskaya, I. O. Sharp, J. S. Goldman, S. R. Kanabar, P. N. Livny, J. Dove, S. L. Nickels, B. E. Growth phase-dependent control of transcription start site selection and gene expression by nanoRNAs. Genes Dev, 26:1498-1507, . (PMID: 22751503, PMCID: PMC3403017)

Nickels, B. E. Dove, S. L. NanoRNAs: a class of small RNAs that can prime transcription initiation in bacteria. J Mol Biol, 412:772-781, . (PMID: 21704045, PMCID: PMC3184357)

Bao, X. Pachikara, N. D. Oey, C. B. Balakrishnan, A. Westblade, L. F. Tan, M. Chase, T. Jr Nickels, B. E. Fan, H. Non-coding nucleotides and amino acids near the active site regulate peptide deformylase expression and inhibitor susceptibility in Chlamydia trachomatis. Microbiology, 157:2569-2581, . (PMID: 21719536, PMCID: PMC3352175)

Goldman, S. R. Sharp, J. S. Vvedenskaya, I. O. Livny, J. Dove, S. L. Nickels, B. E. NanoRNAs prime transcription initiation in vivo. Mol Cell, 42:817-825, . (PMID: 21700226, PMCID: PMC3130991)