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Gyan Bhanot, PhD

Selected Publications

  1. Biehl M, Sadowski P, Bhanot G, Bilal E, Dayarian A, Meyer P, Norel R,  Rhrissorrakrai K, Zeller MD, Hormoz S, ‘Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge’, Bioinformatics. 2014 Jul 3. pii: btu407.
  2. Dayarian A, Romero R, Wang Z, Biehl M, Bilal E, Hormoz S, Meyer P, Norel R,  Rhrissorrakrai K, Bhanot G, Luo F, Tarca AL. ‘Predicting protein phosphorylation from gene expression: Top methods from the IMPROVER Species Translation Challenge’, Bioinformatics 2014; doi: 10.1093/bioinformatics/btu490.
  3. Wagh K, Bhatia A, Greenbaum BD, Bhanot G, Bird to Human Transmission Biases and Vaccine Escape Mutants in H5N1 Infections. PLoS One. 2014 Jul 2;9(7):e100754. doi: 10.1371/journal.pone.0100754. eCollection 2014.
  4. Bhatia A, Yadav A, Gagneur J, Zhu C, Steinmetz LM, Bhanot G, Sinha H, (2014). Yeast growth plasticity is regulated by environment specific multi-QTL interactions. G3 (Bethesda). 2014 Jan 28;4(5):769-77. doi: 10.1534/g3.113.009142.
  5. Tomar P, Bhatia A, Ramdas S, Diao L, Bhanot G, Sinha H. (2013) Sporulation Genes Associated with Sporulation Efficiency in Natural Isolates of Yeast. PLoS ONE 8(7): e69765. doi:10. 1371/journal.pone.0069765
  6. Joshi H, Bhanot G, Børresen-Dale AL, Kristensen V. Potential tumorigenic programs associated with TP53 mutation status reveal role of VEGF pathway. British Journal of Cancer. 2012 Nov 6; 107(10):1722-8. doi: 10.1038/bjc.2012.461.
  7. Wagh K, Bhatia A, Lukic S, Alexe G, Reddy A, Ravikumar V, Seiler M, Yao M, Boemo M, Cronk L, Naqvi A, Ganesan S, Levine AJ, Bhanot G. Lactase persistence and lipid pathway selection in the Maasai, 2012, PLoS ONE 7(9): e44751.
  8. Norton K-A, Namazi S, Barnard N, Fujibayashi M, Bhanot G, Ganesan S, Iyatomi H, Ogawa K, Shinbrot T. (2012) Automated Reconstruction Algorithm for Identification of 3D Architectures of Cribriform Ductal Carcinoma In Situ. PLoS ONE 7(9): e44011. doi:10.1371/journal.pone.0044011.
  9. Powell AA, Talasaz AH, Zhang H, Coram MA, Reddy A, Deng G, Telli ML, Advani RH, Carlson RW, Mollick JA, Sheth S, Kurian AW, Ford JM, Stockdale FE, Quake SR, Pease RF, Mindrinos MN, Bhanot G, Dairkee SH, Davis RW, Jeffrey SS. Single Cell Profiling of Circulating Tumor Cells: Transcriptional Heterogeneity and Diversity from Breast Cancer Cell Lines. (2012) PLoS ONE 7(5): e33788. doi:10.1371/journal.pone.0033788
  10. Bilal E, Vassallo K, Toppmeyer D, Barnard N, Rye IH, Almendro V, Russnes H, Børresen-Dale A-L, Levine AJ, Bhanot G, Ganesan S. (2012) Amplified Loci on Chromosomes 8 and 17 Predict Early Relapse in ER-Positive Breast Cancers. PLoS ONE 7(6): e38575. doi:10.1371/journal.pone.0038575.
  11. Toth ML, Melentijevic I, Shah L, Bhatia A, Lu K, Talwar A, Naji H, Ibanez-Ventoso C, Ghose P, Jevince A, Xue J, Herndon LA, Bhanot G, Rongo C, Hall DH, Driscoll M. Neurite Sprouting and Synapse Deterioration in the Aging C. elegans Nervous System, J Neurosci. 2012 Jun 27;32(26):8778-90.
  12. Pathak S, Rege M, Gogtay NJ, Aigal U, Sharma SK, Valecha N, Bhanot G, Kshirsagar NA, Sharma S. (2012) Age-Dependent Sex Bias in Clinical Malarial Disease in Hypoendemic Regions. PLoS ONE 7(4): e35592. doi:10.1371/journal.pone.0035592.
  13. Miles G, Seiler M, Rodriguez L, Rajagopal G, Bhanot G. Identifying microRNA/mRNA dysregulations in ovarian cancer, BMC Research Notes 2012, 5:164.
  14. Vermeer PD, Bell M, Lee K, Vermeer DW, Wieking BG, Bilal E, Bhanot G, Drapkin RI, Ganesan S, Klingelhutz AJ, Hendriks WJ, Lee JH. ErbB2, EphrinB1, Src Kinase and PTPN13 Signaling Complex Regulates MAP Kinase Signaling in Human Cancers. PLoS One. 2012;7(1):e30447. Epub 2012 Jan 18.
  15. Bilal E, Alexe G, Yao M, Cong L, Kulkarni A, Ginjala V, Toppmeyer D, Ganesan S, Bhanot G, Identification of the YES1 kinase as a therapeutic target in basal-like breast cancer, Genes & Cancer, October 2010; vol. 1, 10: 1063-73.
  16. Reddy A, Huang CC, Liu H, DeLisi C, Nevalainen MT, Szalma S, Bhanot G, Robust gene network analysis Reveals alteration of STAT5a as a hallmark of prostate cancer, Genome Informatics 2010, Vol 24:139-53.
  17. Basavanhally A, Ganesan S, Agner S, Monaco J, Feldman M,  Tomaszewski J, Bhanot G, Madabhushi A, Computerized Image-Based Detection and Grading of Lymphocytic Infiltration in HER2+ Breast Cancer Histopathology, IEEE Trans Biomed Eng. 2010, 57(3):642-53.
  18. Liu H, Brannon AR, Reddy A, Alexe G, Seiler M, Arreola A, Oza J, Yao M,  Juan D, Liou L, Ganesan S, Levine AJ, Rathmell WK, Bhanot G. Identifying direct mRNA targets of microRNA dysregulated in cancer: with application to clear cell Renal Cell Carcinoma. BMC Systems Biology 2010, 4:51.
  19. Brannon AR, Reddy A, Seiler M, Arreola A, Moore DT, Pruthi RS, Wallen EM, Nielsen ME,  Liu H, Ljungberg B, Zhao H, Brooks JD, Nathanson KL, Ganesan S,  Bhanot G, Rathmell WK. Molecular Stratification of Clear Cell Renal Cell Carcinoma by Consensus Clustering Reveals Distinct Subtypes and Survival Patterns. Genes and Cancer 2010, 1(2):152–63.
  20. Reddy A, Brannon AR,  Seiler M, Irgon J, Ljungberg B, Zhao H, Brooks JD, Ganesan S, Rathmell WK, Bhanot G. A Predictor for Survival in Intermediate Grade Clear Cell Renal Cell Carcinoma. BIOCOMP 2009: 441-447