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Olga Troyanskaya, PhD

Publications since 2011

Zhou, J. Troyanskaya, O. G. Global quantitative modeling of chromatin factor interactions. PLoS Comput Biol, 10:e1003525, . (PMID: 24675896, PMCID: PMC3967939)

Lee, Y. S. Krishnan, A. Zhu, Q. Troyanskaya, O. G. Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies. Bioinformatics, 29:3036-3044, . (PMID: 24037214, PMCID: PMC3834796)

Ju, W. Greene, C. S. Eichinger, F. Nair, V. Hodgin, J. B. Bitzer, M. Lee, Y. S. Zhu, Q. Kehata, M. Li, M. Jiang, S. Rastaldi, M. P. Cohen, C. D. Troyanskaya, O. G. Kretzler, M. Defining cell-type specificity at the transcriptional level in human disease. Genome Res, 23:1862-1873, . (PMID: 23950145, PMCID: PMC3814886)

Caudy, A. A. Guan, Y. Jia, Y. Hansen, C. Desevo, C. Hayes, A. P. Agee, J. Alvarez-Dominguez, J. R. Arellano, H. Barrett, D. Bauerle, C. Bisaria, N. Bradley, P. H. Breunig, J. S. Bush, E. Cappel, D. Capra, E. Chen, W. Clore, J. Combs, P. A. Doucette, C. Demuren, O. Fellowes, P. Freeman, S. Frenkel, E. Gadala-Maria, D. Gawande, R. Glass, D. Grossberg, S. Gupta, A. Hammonds-Odie, L. Hoisos, A. Hsi, J. Hsu, Y. H. Inukai, S. Karczewski, K. J. Ke, X. Kojima, M. Leachman, S. Lieber, D. Liebowitz, A. Liu, J. Liu, Y. Martin, T. Mena, J. Mendoza, R. Myhrvold, C. Millian, C. Pfau, S. Raj, S. Rich, M. Rokicki, J. Rounds, W. Salazar, M. Salesi, M. Sharma, R. Silverman, S. Singer, C. Sinha, S. Staller, M. Stern, P. Tang, H. Weeks, S. Weidmann, M. Wolf, A. Young, C. Yuan, J. Crutchfield, C. McClean, M. Murphy, C. T. Llinas, M. Botstein, D. Troyanskaya, O. G. Dunham, M. J. A new system for comparative functional genomics of Saccharomyces yeasts. Genetics, 195:275-287, . (PMID: 23852385, PMCID: PMC3761308)

Park, C. Y. Wong, A. K. Greene, C. S. Rowland, J. Guan, Y. Bongo, L. A. Burdine, R. D. Troyanskaya, O. G. Functional knowledge transfer for high-accuracy prediction of under-studied biological processes. PLoS Comput Biol, 9:e1002957, . (PMID: 23516347, PMCID: PMC3597527)

Guan, Y. Dunham, M. J. Troyanskaya, O. G. Caudy, A. A. Comparative gene expression between two yeast species. BMC Genomics, 14:33, . (PMID: 23324262, PMCID: PMC3556494)

Greene, C. S. Troyanskaya, O. G. Chapter 2: Data-driven view of disease biology. PLoS Comput Biol, 8:e1002816, . (PMID: 23300408, PMCID: PMC3531282)

Guan, Y. Gorenshteyn, D. Burmeister, M. Wong, A. K. Schimenti, J. C. Handel, M. A. Bult, C. J. Hibbs, M. A. Troyanskaya, O. G. Tissue-specific functional networks for prioritizing phenotype and disease genes. PLoS Comput Biol, 8:e1002694, . (PMID: 23028291, PMCID: PMC3459891)